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Publication years (Num. hits)
1996-2007 (16) 2008 (15) 2009-2015 (15) 2016-2024 (9)
Publication types (Num. hits)
article(12) incollection(3) inproceedings(40)
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Found 55 publication records. Showing 55 according to the selection in the facets
Hits ? Authors Title Venue Year Link Author keywords
93Abhinav Bhatele, Sameer Kumar 0001, Chao Mei, James C. Phillips, Gengbin Zheng, Laxmikant V. Kalé Overcoming scaling challenges in biomolecular simulations across multiple platforms. Search on Bibsonomy IPDPS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
93Volodymyr V. Kindratenko, David Pointer A case study in porting a production scientific supercomputing application to a reconfigurable computer. Search on Bibsonomy FCCM The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
78Siegfried Benkner, Christian Schröder, Mária Lucká, Othmar Steinhauser Grid Services for Parallel Molecular Dynamics with NAMD and CHARMM. Search on Bibsonomy ICCSA (1) The full citation details ... 2008 DBLP  DOI  BibTeX  RDF NAMD, CHARMM, ionic liquid, Grid service, molecular dynamics
65Guochun Shi, Volodymyr V. Kindratenko Implementation of NAMD molecular dynamics non-bonded force-field on the cell broadband engine processor. Search on Bibsonomy IPDPS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
65Sameer Kumar 0001, Chao Huang 0029, George Almási 0001, Laxmikant V. Kalé Achieving strong scaling with NAMD on Blue Gene/L. Search on Bibsonomy IPDPS The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
56Laxmikant V. Kalé, Sameer Kumar 0001, Gengbin Zheng, Chee Wai Lee Scaling Molecular Dynamics to 3000 Processors with Projections: A Performance Analysis Case Study. Search on Bibsonomy International Conference on Computational Science The full citation details ... 2003 DBLP  DOI  BibTeX  RDF
47Nancy Tran, Daniel A. Reed Modeling of NAMD's Network Input/Output on Large PC Clusters. Search on Bibsonomy IPDPS The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
47Rafal Kluszczynski, Piotr Bala Supporting NAMD Application on the Grid Using GPE. Search on Bibsonomy PPAM The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
47James C. Phillips, Gengbin Zheng, Sameer Kumar 0001, Laxmikant V. Kalé NAMD: biomolecular simulation on thousands of processors. Search on Bibsonomy SC The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
37Jason R. Villarreal, Walid A. Najjar Compiled hardware acceleration of Molecular Dynamics code. Search on Bibsonomy FPL The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
31Justin M. Wozniak, Michael Wilde JETS: Language and System Support for Many-Parallel-Task Computing. Search on Bibsonomy ICPP Workshops The full citation details ... 2011 DBLP  DOI  BibTeX  RDF namd, mptc, mpi, many-task computing, mtc
31Sadaf R. Alam, Jeffery A. Kuehn, Richard F. Barrett, Jeffrey M. Larkin, Mark R. Fahey, Ramanan Sankaran, Patrick H. Worley Cray XT4: an early evaluation for petascale scientific simulation. Search on Bibsonomy SC The full citation details ... 2007 DBLP  DOI  BibTeX  RDF AORSA, Cray XT4, HPCC, IOR, NAMD, S3D, CAM, POP
28Santiago Antolínez, Peter Eugene Jones, James C. Phillips, Jodi A. Hadden-Perilla AMBERff at Scale: Multimillion-Atom Simulations with AMBER Force Fields in NAMD. Search on Bibsonomy J. Chem. Inf. Model. The full citation details ... 2024 DBLP  DOI  BibTeX  RDF
28David J. Hardy, Jaemin Choi, Wei Jiang, Emad Tajkhorshid Experiences Porting NAMD to the Data Parallel C++ Programming Model. Search on Bibsonomy IWOCL The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
28Haochuan Chen, Julio D. C. Maia, Brian K. Radak, David J. Hardy, Wensheng Cai, Christophe Chipot, Emad Tajkhorshid Boosting Free-Energy Perturbation Calculations with GPU-Accelerated NAMD. Search on Bibsonomy J. Chem. Inf. Model. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
28Wei Jiang, Christophe Chipot, Benoît Roux Computing Relative Binding Affinity of Ligands to Receptor: An Effective Hybrid Single-Dual-Topology Free-Energy Perturbation Approach in NAMD. Search on Bibsonomy J. Chem. Inf. Model. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
28Junshi Chen, Hong An, Binghui Yan, Weihao Liang, Xin Liu 0081 Redesign NAMD Molecular Dynamics Non-Bonded Force-Field on Sunway Manycore Processor. Search on Bibsonomy HPCC/SmartCity/DSS The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
28Bilge Acun, David J. Hardy, Laxmikant V. Kalé, Keqin Li 0001, James C. Phillips, John E. Stone Scalable molecular dynamics with NAMD on the Summit system. Search on Bibsonomy IBM J. Res. Dev. The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
28James C. Phillips What You Should Know About NAMD and Charm++ But Were Hoping to Ignore. Search on Bibsonomy PEARC The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
28John E. Stone, Antti-Pekka Hynninen, James C. Phillips, Klaus Schulten Early Experiences Porting the NAMD and VMD Molecular Simulation and Analysis Software to GPU-Accelerated OpenPOWER Platforms. Search on Bibsonomy ISC Workshops The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
28Yamandú González, Pablo Ezzatti, Margot Paulino Unleashing the Graphic Processing Units-Based Version of NAMD. Search on Bibsonomy IWBBIO The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
28Aaron H. Brown, Tiffany R. Walsh An improved TIGER2 implementation for NAMD suitable for the Blue Gene architecture. Search on Bibsonomy Comput. Phys. Commun. The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
28Sunhwan Jo, Wei Jiang A generic implementation of replica exchange with solute tempering (REST2) algorithm in NAMD for complex biophysical simulations. Search on Bibsonomy Comput. Phys. Commun. The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
28Drasko Tomic Exploring bacterial biofilms with NAMD, a highly scalable parallel code for complex molecular simulations. Search on Bibsonomy MIPRO The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
28Wei Jiang, James C. Phillips, Lei Huang 0019, Mikolai Fajer, Yilin Meng, James C. Gumbart, Yun Luo, Klaus Schulten, Benoît Roux Generalized scalable multiple copy algorithms for molecular dynamics simulations in NAMD. Search on Bibsonomy Comput. Phys. Commun. The full citation details ... 2014 DBLP  DOI  BibTeX  RDF
28James C. Phillips, John E. Stone, Kirby L. Vandivort, Timothy G. Armstrong, Justin M. Wozniak, Michael Wilde, Klaus Schulten Petascale Tcl with NAMD, VMD, and Swift/T. Search on Bibsonomy HPTCDL@SC The full citation details ... 2014 DBLP  DOI  BibTeX  RDF
28James C. Phillips, Klaus Schulten, Abhinav Bhatele, Chao Mei, Yanhua Sun, Eric J. Bohm, Laxmikant V. Kalé Scalable Molecular Dynamics with NAMD. Search on Bibsonomy Parallel Science and Engineering Applications The full citation details ... 2013 DBLP  BibTeX  RDF
28Adam K. L. Wong, Andrzej M. Goscinski A VMD Plugin for NAMD Simulations on Amazon EC2. Search on Bibsonomy ICCS The full citation details ... 2012 DBLP  DOI  BibTeX  RDF
28Armen H. Poghosyan, Levon H. Arsenyan, Hrachya V. Astsatryan Comparative NAMD benchmarking on BlueGene/P. Search on Bibsonomy MIPRO The full citation details ... 2012 DBLP  BibTeX  RDF
28 NAnoscale Molecular Dynamics (NAMD). Search on Bibsonomy Encyclopedia of Parallel Computing The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
28Laxmikant V. Kalé, Abhinav Bhatele, Eric J. Bohm, James C. Phillips NAMD (NAnoscale Molecular Dynamics). Search on Bibsonomy Encyclopedia of Parallel Computing The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
28Zhongwei Li, Ebrahim Khosravi, Shuju Bai Interaction simulation of Lipoxygenase with arachidonate acid using NAMD. Search on Bibsonomy BIBM Workshops The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
28William J. Menz, Matthew J. Penna, Mark J. Biggs TNAMD: Implementation of TIGER2 in NAMD. Search on Bibsonomy Comput. Phys. Commun. The full citation details ... 2010 DBLP  DOI  BibTeX  RDF
28Sameer Kumar 0001, Chao Huang 0029, Gengbin Zheng, Eric J. Bohm, Abhinav Bhatele, James C. Phillips, Hao Yu, Laxmikant V. Kalé Scalable molecular dynamics with NAMD on the IBM Blue Gene/L system. Search on Bibsonomy IBM J. Res. Dev. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
28A. B. Mutiara 0001 Analisis Kinerja Sistem Cluster Terhadapa Aplikasi Simulasi Dinamika Molekular NAMD Memanfaatkan Pustaka CHARM++ Search on Bibsonomy CoRR The full citation details ... 2008 DBLP  BibTeX  RDF
28James C. Phillips, Rosemary Braun, Wei Wang 0342, James C. Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant V. Kalé, Klaus Schulten Scalable molecular dynamics with NAMD. Search on Bibsonomy J. Comput. Chem. The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
28Laxmikant V. Kalé, Milind A. Bhandarkar, Robert Brunner, Neal Krawetz, James C. Phillips, Aritomo Shinozaki NAMD: A Case Study in Multilingual Parallel Programming. Search on Bibsonomy LCPC The full citation details ... 1997 DBLP  DOI  BibTeX  RDF
28Mark T. Nelson, William Humphrey, Attila Gürsoy, Andrew Dalke, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten NAMD: a Parallel, Object-Oriented Molecular Dynamics Program. Search on Bibsonomy Int. J. High Perform. Comput. Appl. The full citation details ... 1996 DBLP  DOI  BibTeX  RDF
19Allen D. Malony, Scott Biersdorff, Wyatt Spear, Shangkar Mayanglambam An experimental approach to performance measurement of heterogeneous parallel applications using CUDA. Search on Bibsonomy ICS The full citation details ... 2010 DBLP  DOI  BibTeX  RDF profiling, GPGPU, tracing, performance tools
19Abhinav Bhatele, Laxmikant V. Kalé, Sameer Kumar 0001 Dynamic topology aware load balancing algorithms for molecular dynamics applications. Search on Bibsonomy ICS The full citation details ... 2009 DBLP  DOI  BibTeX  RDF load balancing, mapping, topology, mesh, torus
19Ayose Falcón, Paolo Faraboschi, Daniel Ortega An Adaptive Synchronization Technique for Parallel Simulation of Networked Clusters. Search on Bibsonomy ISPASS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
19Chee Wai Lee, Celso L. Mendes, Laxmikant V. Kalé Towards scalable performance analysis and visualization through data reduction. Search on Bibsonomy IPDPS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
19Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton, Hong Ong, Jeffrey S. Vetter Impact of multicores on large-scale molecular dynamics simulations. Search on Bibsonomy IPDPS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
19Matthew J. Koop, Terry R. Jones, Dhabaleswar K. Panda 0001 MVAPICH-Aptus: Scalable high-performance multi-transport MPI over InfiniBand. Search on Bibsonomy IPDPS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
19Abhinav Bhatele, Laxmikant V. Kalé Application-specific topology-aware mapping for three dimensional topologies. Search on Bibsonomy IPDPS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
19Matthew J. Koop, Rahul Kumar, Dhabaleswar K. Panda 0001 Can software reliability outperform hardware reliability on high performance interconnects?: a case study with MPI over infiniband. Search on Bibsonomy ICS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF reliability, MPI, infiniband
19Maciej Malawski, Tomasz Bartynski, Marian Bubak A Tool for Building Collaborative Applications by Invocation of Grid Operations. Search on Bibsonomy ICCS (3) The full citation details ... 2008 DBLP  DOI  BibTeX  RDF application building, DEISA, Grid computing, tools, virtual laboratory, EGEE
19James C. Phillips, John E. Stone, Klaus Schulten Adapting a message-driven parallel application to GPU-accelerated clusters. Search on Bibsonomy SC The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
19Matthew J. Koop, Jaidev K. Sridhar, Dhabaleswar K. Panda 0001 Scalable MPI design over InfiniBand using eXtended Reliable Connection. Search on Bibsonomy CLUSTER The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
19Lei Chai, Qi Gao 0004, Dhabaleswar K. Panda 0001 Understanding the Impact of Multi-Core Architecture in Cluster Computing: A Case Study with Intel Dual-Core System. Search on Bibsonomy CCGRID The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
19David M. Kunzman, Gengbin Zheng, Eric J. Bohm, James C. Phillips, Laxmikant V. Kalé Poster reception - Charm++ simplifies coding for the cell processor. Search on Bibsonomy SC The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
19Sayantan Sur, Matthew J. Koop, Dhabaleswar K. Panda 0001 MPI and communication - High-performance and scalable MPI over InfiniBand with reduced memory usage: an in-depth performance analysis. Search on Bibsonomy SC The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
19Valentina Salapura, Randy Bickford, Matthias A. Blumrich, Arthur A. Bright, Dong Chen 0005, Paul Coteus, Alan Gara, Mark Giampapa, Michael Gschwind, Manish Gupta 0002, Shawn Hall, Ruud A. Haring, Philip Heidelberger, Dirk Hoenicke, Gerard V. Kopcsay, Martin Ohmacht, Rick A. Rand, Todd Takken, Pavlos Vranas Power and performance optimization at the system level. Search on Bibsonomy Conf. Computing Frontiers The full citation details ... 2005 DBLP  DOI  BibTeX  RDF BlueGene/L, application performance analysis, application scaling in multiprocessor systems, power/performance efficient systems, power/performance tradeos in systems, chip multiprocessors, supercomputers
19Sameer Kumar 0001, Laxmikant V. Kalé Opportunities and Challenges of Modern Communication Architectures: Case Study with QsNet. Search on Bibsonomy IPDPS The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
19Naohito Sato, Jean-Marc Jézéquel Implementing and Evaluating an Efficient Dynamic Load-Balancer for Distributed Molecular Dynamics Simulation. Search on Bibsonomy ICPP Workshops The full citation details ... 2000 DBLP  DOI  BibTeX  RDF
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