Search results for "GeneChip"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
77	Steffen Heber, Beate Sick	Automatic quality assessment of Affymetrix GeneChip data.	ACM Southeast Regional Conference	2006	DBLP DOI BibTeX RDF	affymetrix GeneChip microarray experiments, automated quality assessment, knowledge based expert system
69	Radhakrishnan Nagarajan	Power-Law Signatures and Patchiness in Genechip Oligonucleotide Microarrays.	Computational Intelligence in Biomedicine and Bioinformatics	2008	DBLP DOI BibTeX RDF
69	Guoqing Lu, The V. Nguyen, Yuannan Xia, Zhaoyi Wang, Mike Fromm 0002	AffyMiner - a Tool for Significant Gene Mining in Affymetrix GeneChip Microarray Data.	HICSS	2007	DBLP DOI BibTeX RDF
51	William B. Langdon, Joanna Rowsell, Andrew P. Harrison	Creating regular expressions as mRNA motifs with GP to predict human exon splitting.	GECCO	2009	DBLP DOI BibTeX RDF	HDONA, affymetrix genechip, alternative splicing of homosapiens exons, biological interpretation of computer generated motifs, gene expression and regulation, integration of genetic programming into bioinformatics, genetic algorithms, genetic programming, bioinformatics, regular expression, grammar, microarray analysis, alternative splicing, strongly typed genetic programming
48	Jared Fox, Nik Brown	Sensitivity and Consistency of Affymetrix GeneChip Normalization Methods.	BIBE	2007	DBLP DOI BibTeX RDF
48	Dan Bartell, Xiaojun Di, Wei-Min Liu	Processing GeneChip© array images.	ISBI	2002	DBLP DOI BibTeX RDF
29	Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young	Bayesian Methods for Elucidating Genetic Regulatory Networks.	IEEE Intell. Syst.	2002	DBLP DOI BibTeX RDF	Affymetrix GeneChip, annotated Bayesian network, annotated graphical model, computational functional genomics, gene expression array, genomic binding location data, genomic expression data, annotation, model validation, genetic regulatory network
29	Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Stephen A. Chervitz, David Kulp, Michael A. Siani-Rose	NetAffx: affymetrix probeset annotations.	SAC	2002	DBLP DOI BibTeX RDF	GRAPA, GeneChip, netaffx, microarray, protein domains
26	Ernur Saka, Benjamin J. Harrison, Kirk West, Jeffrey C. Petruska, Eric C. Rouchka	Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data sets.	ICCABS	2016	DBLP DOI BibTeX RDF
26	Yusaku Wada, Masaaki Matsuura, Minoru Sugawara, Masaru Ushijima, Satoshi Miyata, Koichi Nagasaki, Tetsuo Noda, Yoshio Miki	Development of detection method for novel fusion gene using GeneChip exon array.	J. Clin. Bioinform.	2014	DBLP DOI BibTeX RDF
26	Hung-Ming Lai, Andreas Alexander Albrecht, Kathleen Steinhöfel	Robust Signature Discovery for Affymetrix GeneChip® Cancer Classification.	ICAART (Revised Selected Papers)	2014	DBLP DOI BibTeX RDF
26	Mario Fasold, Hans Binder	AffyRNADegradation: control and correction of RNA quality effects in GeneChip expression data.	Bioinform.	2013	DBLP DOI BibTeX RDF
26	Arianna Consiglio, Massimo Carella, Giorgio De Caro, Gianfranco Delle Foglie, Candida Giovannelli, Giorgio Grillo, Massimo Ianigro, Flavio Licciulli, Orazio Palumbo, Ada Piepoli, Elena Ranieri, Sabino Liuni	BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
26	Matthew N. McCall, Anthony Almudevar	Affymetrix GeneChip microarray preprocessing for multivariate analyses.	Briefings Bioinform.	2012	DBLP DOI BibTeX RDF
26	Paolo Magni, Angela Simeone, Sandra Healy, Antonella Isacchi, Roberta Bosotti	Summarizing Probe Intensities of Affymetrix GeneChip 3' Expression Arrays Taking into Account Day-to-Day Variability.	IEEE ACM Trans. Comput. Biol. Bioinform.	2011	DBLP DOI BibTeX RDF
26	Fenglong Liu, Joseph White, Corina Antonescu, John Quackenbush	GCOD - GeneChip Oncology Database.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
26	Matthew N. McCall, Peter N. Murakami, Margus Lukk, Wolfgang Huber, Rafael A. Irizarry	Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
26	Reinhard Vonthein, Andreas Ziegler 0001	On the Use of the Terms Repeatability and Reproducibility Regarding "Reproducibility of genotypes as measured by the Affymetrix GeneChip(R) 100 K Human Mapping Array Set" by Fridley and colleagues (2008) Comput. Stat. Data Anal. 52: 5367-5374	Comput. Stat. Data Anal.	2010	DBLP DOI BibTeX RDF
26	Erdogan Taskesen, Renee Beekman, Jeroen de Ridder, Bas J. Wouters, Justine K. Peeters, Ivo P. Touw, Marcel J. T. Reinders, Ruud Delwel	HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
26	Jakub Mieczkowski, Magdalena E. Tyburczy, Michal Dabrowski, Piotr Pokarowski	Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
26	Hans Binder, Knut Krohn, Conrad J. Burden	Washing scaling of GeneChip microarray expression.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
26	Zhining Wen, Charles Wang, Quan Shi, Ying Huang, Zhenqiang Su, Huixiao Hong, Weida Tong, Leming Shi	Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
26	Zhongxue Chen, Monnie McGee, Qingzhong Liu, Y. Megan Kong, Xudong Huang, Jack Y. Yang, Richard H. Scheuermann	Identifying Differentially Expressed Genes based on probe level data for GeneChip arrays.	Int. J. Comput. Biol. Drug Des.	2010	DBLP DOI BibTeX RDF
26	Kolja Henckel	Development of a software infrastructure to mine GeneChip expression data and to combine datasets from different Medicago truncatula expression profiling platforms.		2010	RDF
26	William B. Langdon, Andrew P. Harrison	Evolving DNA motifs to predict GeneChip probe performance.	Algorithms Mol. Biol.	2009	DBLP DOI BibTeX RDF
26	Hironori Fujisawa, Youko Horiuchi, Yoshiaki Harushima, Toyoyuki Takada, Shinto Eguchi, Takako Mochizuki, Takayuki Sakaguchi, Toshihiko Shiroishi, Nori Kurata	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
26	Mi-Chia Ma, Hsiao-Fang Lin, Ying Xu 0001	Detect the Different Isoforms Using GeneChip Human Exon 1.0 ST Arrays.	BMEI	2009	DBLP DOI BibTeX RDF
26	Hans Binder, Stephan Preibisch	"Hook"-calibration of GeneChip-microarrays: Theory and algorithm.	Algorithms Mol. Biol.	2008	DBLP DOI BibTeX RDF
26	Hans Binder, Knut Krohn, Stephan Preibisch	"Hook"-calibration of GeneChip-microarrays: Chip characteristics and expression measures.	Algorithms Mol. Biol.	2008	DBLP DOI BibTeX RDF
26	Brooke L. Fridley, Stephen T. Turner, Arlene B. Chapman, Andrei S. Rodin, Eric Boerwinkle, Kent R. Bailey	Reproducibility of genotypes as measured by the affymetrix GeneChip® 100K Human Mapping Array set.	Comput. Stat. Data Anal.	2008	DBLP DOI BibTeX RDF
26	Kazuyuki Numata, Ryo Yoshida, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano	ExonMiner: Web service for analysis of GeneChip Exon array data.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
26	Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han 0007, Jim Kaput, James C. Fuscoe, Weida Tong	Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
26	Sérgio A. de Carvalho, Sven Rahmann	Better GeneChip microarray Layouts by Combining Probe Placement and Embedding.	J. Bioinform. Comput. Biol.	2008	DBLP DOI BibTeX RDF
26	William B. Langdon, Andrew P. Harrison	Evolving Regular Expressions for GeneChip Probe Performance Prediction.	PPSN	2008	DBLP DOI BibTeX RDF
26	William B. Langdon	Evolving GeneChip correlation predictors on parallel graphics hardware.	IEEE Congress on Evolutionary Computation	2008	DBLP DOI BibTeX RDF
26	Manhong Dai, Pinglang Wang, Elvis Jakupovic, Stanley J. Watson, Fan Meng	Web-based GeneChip analysis system for large-scale collaborative projects.	Bioinform.	2007	DBLP DOI BibTeX RDF
26	Steven Eschrich, Andrew M. Hoerter	Libaffy: software for processing Affymetrix(R) GeneChip(R) data.	Bioinform.	2007	DBLP DOI BibTeX RDF
26	Zhongxue Chen, Monnie McGee, Qingzhong Liu, Richard H. Scheuermann	A distribution free summarization method for Affymetrix GeneChip® arrays.	Bioinform.	2007	DBLP DOI BibTeX RDF
26	Raad Z. Gharaibeh, Anthony Fodor, Cynthia Gibas	Software Note: Using probe secondary structure information to enhance Affymetrix GeneChip background estimates.	Comput. Biol. Chem.	2007	DBLP DOI BibTeX RDF
26	Brian E. Howard, Beate Sick, Imara Perera, Yang Ju Im, Heike Winter-Sederoff, Steffen Heber	Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier.	BIBE	2007	DBLP DOI BibTeX RDF
26	Lesley Jones, Darlene R. Goldstein, Gareth P. Hughes, Andrew Strand, François Collin, Stephen B. Dunnett, Charles L. Kooperberg, Aaron Aragaki, James M. Olson, Sarah J. Augood, Richard L. M. Faull, Ruth Luthi-Carter, Valentina Moskvina, Angela K. Hodges	Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
26	Guoqing Lu, The V. Nguyen, Yuannan Xia, Michael Fromm 0002	AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
26	Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Tripputi, Mark W. Porter	A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
26	Zihua Hu, Gail R. Willsky	Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
26	Anne-Mette K. Hein, Sylvia Richardson	A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
26	Rafael A. Irizarry, Zhijin Wu, Harris A. Jaffee	Comparison of Affymetrix GeneChip expression measures.	Bioinform.	2006	DBLP DOI BibTeX RDF
26	Will Sheffler, Eli Upfal, John Sedivy, William Stafford Noble	A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays.	CSB	2005	DBLP DOI BibTeX RDF	support vector machine, microarrays, gene expression
26	Chao Lu	Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays.	BMC Bioinform.	2004	DBLP DOI BibTeX RDF
26	Zhining Wang, Mark G. Lewis, Martin E. Nau, Alma Arnold, Maryanne T. Vahey	Identification and utilization of inter-species conserved (ISC) probesets on Affymetrix human GeneChip(r) platforms for the optimization of the assessment of expression patterns in non human primate (NHP) samples.	BMC Bioinform.	2004	DBLP DOI BibTeX RDF
26	Josephine Chen, Po Zhao, Donald Massaro, Linda B. Clerch, Richard R. Almon, Debra C. DuBois, William J. Jusko, Eric P. Hoffman	The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
26	Leslie Cope, Rafael A. Irizarry, Harris A. Jaffee, Zhijin Wu, Terence P. Speed	A benchmark for Affymetrix GeneChip expression measures.	Bioinform.	2004	DBLP DOI BibTeX RDF
26	Laurent Gautier, Leslie Cope, Benjamin M. Bolstad, Rafael A. Irizarry	affy - analysis of Affymetrix GeneChip data at the probe level.	Bioinform.	2004	DBLP DOI BibTeX RDF
21	William B. Langdon, Andrew P. Harrison	GP on SPMD parallel graphics hardware for mega Bioinformatics data mining.	Soft Comput.	2008	DBLP DOI BibTeX RDF
21	Matthew W. B. Trotter, Bernard F. Buxton	Unsupervised Thresholding of Affymetrix Microarray Data.	ICCTA	2007	DBLP DOI BibTeX RDF
21	Yuriy L. Orlov, Jiangtao Zhou, Joanne Chen, Atif Shahab, Vladimir A. Kuznetsov	APMA Database for Affymetrix Target Sequences Mapping, Quality Assessment and Expression Data Mining.	PRIB	2007	DBLP DOI BibTeX RDF	Affymetrix U133, target sequences, cross-hybridization, genome repeats, data mining, classification, database, mapping, recognition, errors
21	Jake Yue Chen, John V. Carlis, Ning Gao	A complex biological database querying method.	SAC	2005	DBLP DOI BibTeX RDF	database management system (DBMS), query modeling, complex queries
21	Zhijin Wu, Rafael A. Irizarry	Stochastic models inspired by hybridization theory for short oligonucleotide arrays.	RECOMB	2004	DBLP DOI BibTeX RDF	affymetrix probe-level data, background adjustment, stochastic models, microarrays, physical models
21	Geoffrey Yang, Ming-Hsiu Ho, Earl Hubbell	High-Throughput Microarray-Based Genotyping.	CSB	2004	DBLP DOI BibTeX RDF
21	Yuh-Jyh Hu	Analyzing gene behaviors with genetic computation.	KES	2000	DBLP DOI BibTeX RDF