Search results for "clustalw"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
214	Kridsadakorn Chaichoompu, Surin Kittitornkun, Sissades Tongsima	MT-ClustalW: multithreading multiple sequence alignment.	IPDPS	2006	DBLP DOI BibTeX RDF
141	Siamak Rezaei, Md. Maruf Monwar	Divide-and-Conquer Algorithm for Clustalw-MPI.	CCECE	2006	DBLP DOI BibTeX RDF
91	Yongchao Liu, Bertil Schmidt, Douglas L. Maskell	MSA-CUDA: Multiple Sequence Alignment on Graphics Processing Units with CUDA.	ASAP	2009	DBLP DOI BibTeX RDF
81	Yan Lin Aung, Douglas L. Maskell, Timothy F. Oliver, Bertil Schmidt, William Bong	C-Based Design Methodology for FPGA Implementation of ClustalW MSA.	PRIB	2007	DBLP DOI BibTeX RDF	ClustalW, FPGA, multiple sequence alignment, sequence analysis
73	Kevin Liu, Serita M. Nelesen, Sindhu Raghavan, C. Randal Linder, Tandy J. Warnow	Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Markov processes, Biology and genetics
68	Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig	GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment.	HiPC	2006	DBLP DOI BibTeX RDF
64	Kuo-Bin Li	ClustalW-MPI: ClustalW analysis using distributed and parallel computing.	Bioinform.	2003	DBLP DOI BibTeX RDF
55	Yongchao Liu, Bertil Schmidt, Douglas L. Maskell	Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA.	IPDPS	2009	DBLP DOI BibTeX RDF
55	Carlos Raimundo Erig Lima, Heitor S. Lopes, Maiko R. Moroz, Ramon M. Menezes	Multiple Sequence Alignment Using Reconfigurable Computing.	ARC	2007	DBLP DOI BibTeX RDF
50	Hyon Chang Kim, Yong Beom Seo, Ji Hwan Song, Dong Soon Choi, Churl K. Min, Han Jip Kim	Massive Multiple Sequence Alignment of 16S Bacterial Ribosomal RNAs Using ClustalW-Message Passing Interface (MPI) Based on Beowulf Linux System.	CSB Workshops	2005	DBLP DOI BibTeX RDF	ClustalWMPI, 16S ribosomal RNA, ribosomal antibiotics, multiple sequence alignment
36	Ankit Agrawal 0001, S. K. Khaitan	A new heuristic for multiple sequence alignment.	EIT	2008	DBLP DOI BibTeX RDF
36	Guangming Tan, Liu Peng, Shengzhong Feng, Ninghui Sun	Load Balancing and Parallel Multiple Sequence Alignment with Tree Accumulation.	Euro-Par	2006	DBLP DOI BibTeX RDF
36	Yiming Li 0005, Cheng-Kai Chen	Parallelization of Multiple Genome Alignment.	HPCC	2005	DBLP DOI BibTeX RDF
36	Jiancong Luo, Ishfaq Ahmad, Munib Ahmed, Raymond A. Paul	Parallel Multiple Sequence Alignment with Dynamic Scheduling.	ITCC (1)	2005	DBLP DOI BibTeX RDF	task tree, progressive alignment, parallel computing, dynamic scheduling, multiple sequence alignment
32	Sangwu Lim, Taeseon Yoon	Genomic Comparison of Four Metapneumovirus Strains Using Decision Tree, Apriori Algorithm, ClustalW, and Phylogenetic Reconstruction.	ICBRA	2018	DBLP DOI BibTeX RDF
32	Che-Lun Hung, Yu-Shiang Lin, Chun-Yuan Lin, Yeh-Ching Chung, Yi-Fang Chung	CUDA ClustalW: An efficient parallel algorithm for progressive multiple sequence alignment on Multi-GPUs.	Comput. Biol. Chem.	2015	DBLP DOI BibTeX RDF
32	Atabak Mahram, Martin C. Herbordt	FMSA: FPGA-Accelerated ClustalW-Based Multiple Sequence Alignment through Pipelined Prefiltering.	FCCM	2012	DBLP DOI BibTeX RDF
32	Vipin Sachdeva, Michael Kistler, David A. Bader	Evaluating Cell/B.E software cache for ClustalW.	ISCAS	2010	DBLP DOI BibTeX RDF
32	Ryan Potter	Constructing More Accurate Phylogenetic Trees for Highly Divergent Sequences using ClustalW.	ICDM (Posters and Workshops)	2008	DBLP BibTeX RDF
32	Avinash Shankaranarayanan, Christine Amaldas	A Computational Framework for Performance Optimization of Bioinformatics ClustalW.	BIOCOMP	2008	DBLP BibTeX RDF
32	Zhihua Du, Feng Lin	pNJTree: A parallel program for reconstruction of neighbor-joining tree and its application in ClustalW.	Parallel Comput.	2006	DBLP DOI BibTeX RDF
32	Timothy F. Oliver, Bertil Schmidt, Darran Nathan, Ralf Clemens, Douglas L. Maskell	Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.	Bioinform.	2005	DBLP DOI BibTeX RDF
32	Davinder K. Kohli, Anand K. Bachhawat	CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics.	Nucleic Acids Res.	2003	DBLP DOI BibTeX RDF
31	Sebastián Isaza, Friman Sánchez, Georgi Gaydadjiev, Alex Ramírez, Mateo Valero	Scalability Analysis of Progressive Alignment on a Multicore.	CISIS	2010	DBLP DOI BibTeX RDF	clustalw, bioinformatics, multicore, multiple sequence alignment, cell
31	Çaglar Yilmaz, Mustafa Gök	An Optimized System for Multiple Sequence Alignment.	ReConFig	2009	DBLP DOI BibTeX RDF	ClustalW, Hardware, Multiple Sequence Alignment
18	Sebastián Isaza, Friman Sánchez, Georgi Gaydadjiev, Alex Ramírez, Mateo Valero	Preliminary Analysis of the Cell BE Processor Limitations for Sequence Alignment Applications.	SAMOS	2008	DBLP DOI BibTeX RDF
18	Xiaoyong Fang, Zhenghua Wang, Zhigang Luo, Bo Yuan, Fan Ding	The detection and assessment of possible RNA secondary structure using multiple sequence alignment.	SAC	2007	DBLP DOI BibTeX RDF	multiple sequence alignment, RNA secondary structure, non-coding RNA
18	Vipin Sachdeva, Michael Kistler, William Evan Speight, Tzy-Hwa Kathy Tzeng	Exploring the Viability of the Cell Broadband Engine for Bioinformatics Applications.	IPDPS	2007	DBLP DOI BibTeX RDF
18	Feng Yue, Jijun Tang	A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference.	BIBM	2007	DBLP DOI BibTeX RDF
18	Vincenzo Cutello, D. Lee, Giuseppe Nicosia, Mario Pavone, I. Prizzi	Aligning Multiple Protein Sequences by Hybrid Clonal Selection Algorithm with Insert-Remove-Gaps and BlockShuffling Operators.	ICARIS	2006	DBLP DOI BibTeX RDF	hypermutation operator, bioinformatics, multiple sequence alignment, immune algorithms, clonal selection algorithms, protein sequences
18	Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen	Parallel implementation and performance characterization of MUSCLE.	IPDPS	2006	DBLP DOI BibTeX RDF
18	Hongwei Huo, Vojislav Stojkovic, Zhiwei Xiao	A Maximum Weighted Path Approach to Multiple Alignments for DNA Sequences.	ICNC (2)	2006	DBLP DOI BibTeX RDF
18	Vipin Sachdeva, Michael Kistler, Evan Speight	Poster reception - Pairwise alignments on the cell processor.	SC	2006	DBLP DOI BibTeX RDF
18	Erik Pitzer	Parallel Progressive Multiple Sequence Alignment.	EUROCAST	2005	DBLP DOI BibTeX RDF
18	Markus Bauer 0001, Gunnar W. Klau, Knut Reinert	Multiple Structural RNA Alignment with Lagrangian Relaxation.	WABI	2005	DBLP DOI BibTeX RDF
18	Walter L. Ruzzo	Searching for Non-coding RNA.	BSB	2005	DBLP DOI BibTeX RDF
18	René Thomsen, Wouter Boomsma	Multiple Sequence Alignment Using SAGA: Investigating the Effects of Operator Scheduling, Population Seeding, and Crossover Operators.	EvoWorkshops	2004	DBLP DOI BibTeX RDF
18	Robert C. Edgar	MUSCLE: Multiple Sequence Alignment with Improved Accuracy and Speed.	CSB	2004	DBLP DOI BibTeX RDF
18	Mathieu Blanchette, Samson Kwong, Martin Tompa	An Empirical Comparison of Tools for Phylogenetic Footprinting.	BIBE	2003	DBLP DOI BibTeX RDF
18	Gareth Hannaford, Carsten Maple	Determining Candidate Binding Site Locations Using Conserved Features.	IV	2003	DBLP DOI BibTeX RDF
18	Saumil Mehta, Deendayal Dinakarpandian	ConsDiff: Identification of Conserved Differences between Sets of Amino Acid Sequences.	DEXA Workshops	2003	DBLP DOI BibTeX RDF
18	L. A. Anbarasu, P. Narayanasamy, V. Sundararajan	Multiple Sequence Alignment Using Parallel Genetic Algorithms.	SEAL	1998	DBLP DOI BibTeX RDF