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Results
Found 265 publication records. Showing 265 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
97 | Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund, D. Nemazee, Julia V. Ponomarenko, Muthu Sathiamurthy, Scott Stewart, Scott Way, Stephen S. Wilson, Björn Peters |
The Immune Epitope Database and Analysis Resource. |
PRIB |
2006 |
DBLP DOI BibTeX RDF |
|
86 | Simon M. Garrett |
A Paratope Is Not an Epitope: Implications for Immune Network Models and Clonal Selection. |
ICARIS |
2003 |
DBLP DOI BibTeX RDF |
Paratope, epitope, critical evaluation, Clonal Selection (CS), Immune Network Models, Artificial Immune Systems (AIS) |
78 | Brendan Mumey, Nathaniel Ohler, Thomas Angel, Algirdas J. Jesaitis, Edward A. Dratz |
Filtering Epitope Alignments to Improve Protein Surface Prediction. |
ISPA Workshops |
2006 |
DBLP DOI BibTeX RDF |
|
78 | Dokyun Na, Doheon Lee |
Mathematical Modeling of Immune Suppression. |
ICARIS |
2005 |
DBLP DOI BibTeX RDF |
|
66 | Margaret Dah-Tsyr Chang, Hao-Teng Chang, Rong-Yuan Huang, Wen-Shyong Tzou, Chih-Hong Liu, Wei-Jun Zhung, Hsien-Wei Wang, Chun-Tien Chang, Tun-Wen Pai |
A Database for Prediction of Unique Peptide Motifs as Linear Epitopes. |
ISBRA |
2007 |
DBLP DOI BibTeX RDF |
unique peptide motif, linear epitope, antigenicity, protein family, specificity |
58 | Brendan Mumey, Brian W. Bailey, Edward A. Dratz |
Revealing protein structures: a new method for mapping antibody epitopes. |
RECOMB |
2002 |
DBLP DOI BibTeX RDF |
|
47 | Dennis Maletich Junqueira, Rúbia Marília de Medeiros, Sabrina Esteves de Matos Almeida, Vanessa Rodrigues Paixão-Cortez, Paulo Michel Roehe, Fernando Rosado Spilki |
Mapping HIV-1 Subtype C gp120Epitopes Using a Bioinformatic Approach. |
BSB |
2009 |
DBLP DOI BibTeX RDF |
HIV-1, subtype C, epitope, gp120, bioinformatics, HLA |
39 | Refat Sharmin, Abul Bashar Mir Md Khademul Islam |
A highly conserved WDYPKCDRA epitope in the RNA directed RNA polymerase of human coronaviruses can be used as epitope-based universal vaccine design. |
BMC Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
39 | Zeynep Kosaloglu-Yalçin, Inka Zoernig, Niels Halama, Eliana Ruggiero, Benedikt Brors, Dirk Jäger |
The epitope landscape of CRC liver metastases analyzed by whole-exome sequencing and in silico epitope prediction. |
BCB |
2014 |
DBLP DOI BibTeX RDF |
|
39 | Sharat Chandra, Tiratha Raj Singh |
Linear B cell epitope prediction for epitope vaccine design against meningococcal disease and their computational validations through physicochemical properties. |
Netw. Model. Anal. Health Informatics Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
|
39 | Huynh-Hoa Bui, John Sidney, Wei Li, Nicholas Fusseder, Alessandro Sette |
Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines. |
BMC Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
|
39 | Chibing Gong, Yan Li, Ming Li, Jun Luo, Hong Cao, Min Long |
B-cell Epitope Mapping of Helicobacter pylori Neutrophil-Activating Protein. |
FBIT |
2007 |
DBLP DOI BibTeX RDF |
|
39 | David Heckerman, Carl Myers Kadie, Jennifer Listgarten |
Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction. |
RECOMB |
2006 |
DBLP DOI BibTeX RDF |
|
39 | Claus Lundegaard, Morten Nielsen 0001, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund |
MHC Class I Epitope Binding Prediction Trained on Small Data Sets. |
ICARIS |
2004 |
DBLP DOI BibTeX RDF |
|
39 | Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail |
Epitope Prediction Algorithms for Peptide based Vaccine Design. |
CSB |
2003 |
DBLP DOI BibTeX RDF |
|
39 | Noah Zaitlen, Manuel Reyes-Gomez, David Heckerman, Nebojsa Jojic |
Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding. |
RECOMB |
2007 |
DBLP DOI BibTeX RDF |
|
39 | David C. Trudgian, Felicia Charles Johnson, Zheng Rong Yang |
Predicting HIV-1 T Cell Epitopes Using Bio-basis Function Neural Networks. |
IJCNN |
2006 |
DBLP DOI BibTeX RDF |
|
39 | Heather J. Ruskin, John Burns 0001 |
Network Emergence in Immune System Shape Space. |
ICCSA (2) |
2005 |
DBLP DOI BibTeX RDF |
|
27 | Bernhard Knapp, Ulrich Omasits, Sophie Frantal, Wolfgang Schreiner |
A critical cross-validation of high throughput structural binding prediction methods for pMHC. |
J. Comput. Aided Mol. Des. |
2009 |
DBLP DOI BibTeX RDF |
T cell epitope prediction, Threading, Energy minimization, Substitution, Scoring |
27 | Peng Zhou 0003, Xiang Chen, Zhicai Shang |
Side-chain conformational space analysis (SCSA): A multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities. |
J. Comput. Aided Mol. Des. |
2009 |
DBLP DOI BibTeX RDF |
Multi-conformation-based quantitative structure-activity relationship, Side-chain conformational space analysis, Rotamer library, Self-consistent mean field theory, Protein-peptide complex, HLA-A*0201-restricted CTL epitope |
27 | T. C. Ip, Vincent A. Fischetti, Jeanette P. Schmidt |
An Algorithm for Identifying Similar Amino Acid Clusters among Different Alpha-Helical Coiled-Coil Proteins Using Their Secondary Structure. |
Algorithmica |
1999 |
DBLP DOI BibTeX RDF |
Coiled-coil, Epitope, Dynamic programming, Computational biology, Protein structure |
20 | Étienne Goffinet, Raghvendra Mall, Ankita Singh, Rahul Kaushik, Filippo Castiglione |
MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor. |
CoRR |
2024 |
DBLP DOI BibTeX RDF |
|
20 | Muhammad Shahab, Muhammad Waleed Iqbal, Abbas Ahmad, Fahad M. Alshabrmi, Dong-Qing Wei, Abbas Khan, Guojun Zheng |
Immunoinformatics-driven In silico vaccine design for Nipah virus (NPV): Integrating machine learning and computational epitope prediction. |
Comput. Biol. Medicine |
2024 |
DBLP DOI BibTeX RDF |
|
20 | Chhaya Singh, Neeru Adlakha, Kamal Raj Pardasani |
Fuzzy Deep Learning Model for Prediction of Conformational Epitope. |
SN Comput. Sci. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Ivan Jacobs, Lim Chwee Ming, Jamie Mong, Manolis Maragoudakis, Nishant Malik |
In silico antibody-peptide epitope prediction for personalized cancer therapy. |
Frontiers Appl. Math. Stat. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Ran Liu, Ye-Fan Hu, Jin Du, Bao-Zhong Zhang, Thomas Yau, Xiaodan Fan, Jian-Dong Huang |
Family-Specific Training Improves Linear B Cell Epitope Prediction for Emerging Viruses. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Hamid Motamedi, Marzie Mahdizade Ari, Mohsen Shahlaei, Sajad Moradi, Parisa Farhadikia, Amirhoushang Alvandi, Ramin Abiri |
Designing multi-epitope vaccine against important colorectal cancer (CRC) associated pathogens based on immunoinformatics approach. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Babak Beikzadeh |
Immunoinformatics design of multi-epitope vaccine using OmpA, OmpD and enterotoxin against non-typhoidal salmonellosis. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Anand K. Keshri, Rimanpreet Kaur, Suraj S. Rawat, Naina Arora, Rajan K. Pandey, Bajarang V. Kumbhar, Amit Mishra, Shweta Tripathi, Amit Prasad |
Designing and development of multi-epitope chimeric vaccine against Helicobacter pylori by exploring its entire immunogenic epitopes: an immunoinformatic approach. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Mona Shafaghi, Zohreh Bahadori, Hamid Madanchi, Mohammad Mehdi Ranjbar, Ali Akbar Shabani, Seyed Fazlollah Mousavi |
Immunoinformatics-aided design of a new multi-epitope vaccine adjuvanted with domain 4 of pneumolysin against Streptococcus pneumoniae strains. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Bruna Moreira da Silva, David B. Ascher, Douglas E. V. Pires |
epitope1D: accurate taxonomy-aware B-cell linear epitope prediction. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Gabriel Cia, Fabrizio Pucci, Marianne Rooman |
Critical review of conformational B-cell epitope prediction methods. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Yuepeng Jiang, Miaozhe Huo, Shuai Cheng Li |
TEINet: a deep learning framework for prediction of TCR-epitope binding specificity. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Juntao Deng, Xiao Zhou, Pengyan Zhang, Weibin Cheng, Min Liu 0013, Junzhang Tian |
IEPAPI: a method for immune epitope prediction by incorporating antigen presentation and immunogenicity. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Jeremie Theddy Darmawan, Jenq-Shiou Leu, Cries Avian, Nanda Rizqia Pradana Ratnasari |
MITNet: a fusion transformer and convolutional neural network architecture approach for T-cell epitope prediction. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen 0001, Stephen Schoenberger, Alessandro Sette, Bjoern Peters |
The Cancer Epitope Database and Analysis Resource (CEDAR). |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Tianyi Qiu, Lu Zhang, Zikun Chen, Yuan Wang, Tiantian Mao, Caicui Wang, Yewei Cun, Genhui Zheng, Deyu Yan, Mengdi Zhou, Kailin Tang, Zhiwei Cao |
SEPPA-mAb: spatial epitope prediction of protein antigens for mAbs. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Abdul Rehman Khan, Marcel J. T. Reinders, Indu Khatri |
Determining epitope specificity of T-cell receptors with transformers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman |
The pitfalls of negative data bias for the T-cell epitope specificity challenge. |
Nat. Mac. Intell. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Benjamin Alexander Albert, Yunxiao Yang, Xiaoshan M. Shao, Dipika Singh, Kellie N. Smith, Valsamo Anagnostou, Rachel Karchin |
Deep neural networks predict class I major histocompatibility complex epitope presentation and transfer learn neoepitope immunogenicity. |
Nat. Mac. Intell. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Yicheng Gao, Yuli Gao, Kejing Dong, Siqi Wu, Qi Liu 0019 |
Reply to: The pitfalls of negative data bias for the T-cell epitope specificity challenge. |
Nat. Mac. Intell. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Xiao Yuan |
BeeTLe: A Framework for Linear B-Cell Epitope Prediction and Classification. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Marco Pegoraro 0002, Clémentine Dominé, Emanuele Rodolà, Petar Velickovic, Andreea Deac |
Geometric Epitope and Paratope Prediction. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Pengfei Zhang, Seo-Jin Bang, Heewook Lee |
Active Learning Framework for Cost-Effective TCR-Epitope Binding Affinity Prediction. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Safoura Soleymani, Fatemeh Janati-fard, Mohammad Reza Housaindokht |
Designing a bioadjuvant candidate vaccine targeting infectious bursal disease virus (IBDV) using viral VP2 fusion and chicken IL-2 antigenic epitope: A bioinformatics approach. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Rawaa AlChalabi, Aya Al-Rahim, Dania Omer, Ahmed AbdulJabbar Suleiman |
Immunoinformatics design of multi-epitope peptide-based vaccine against Haemophilus influenzae strain using cell division protein. |
Netw. Model. Anal. Health Informatics Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Xiao Yuan |
BeeTLe: A Framework for Linear B-Cell Epitope Prediction and Classification. |
ECML/PKDD (6) |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Pengfei Zhang, Seo-Jin Bang, Heewook Lee |
Active Learning Framework for Cost-Effective TCR-Epitope Binding Affinity Prediction. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Jodie Ashford, Anikó Ekárt, Felipe Campelo |
Estimating the Limits of Organism-Specific Training for Epitope Prediction. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Avik Bhattacharya, James O. Wrabl, Samuel J. Landry, Ramgopal R. Mettu |
Parallel Computation of Conformational Stability for CD4+ T-cell Epitope Prediction. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Zhang Wan, Zhuoyi Lin, Shamima Rashid, Shaun Yue-Hao Ng, Rui Yin 0002, J. Senthilnath 0001, Chee Keong Kwoh 0001 |
PESI: Paratope-Epitope Set Interaction for SARS-CoV-2 Neutralization Prediction. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Ryan Gardner, Joshua Wilkins, Sejal Mistry, Ramkiran Gouripeddi, Julio C. Facelli |
Structural Homology of Epitope Binding Mimicry in the Onset of Type 1 Diabetes Mellitus. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Salvador Eugenio C. Caoili |
Capturing Solvent-System Effects in B-Cell Epitope Prediction with the HAPTIC3/HEPTAD2 User Toolkit (HUT2). |
BCB |
2023 |
DBLP DOI BibTeX RDF |
|
20 | Jingshu Bi, Yuanjie Zheng, Chongjing Wang, Yanhui Ding |
An Attention Based Bidirectional LSTM Method to Predict the Binding of TCR and Epitope. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Samira Sanami, Mahmoud Rafieian-Kopaei, Korosh Ashrafi Dehkordi, Hamidreza Pazoki-Toroudi, Fatemeh Azadegan-Dehkordi, Gholam-Reza Mobini, Morteza Alizadeh, Muhammad Sadeqi Nezhad, Maryam Ghasemi-Dehnoo, Nader Bagheri |
In silico design of a multi-epitope vaccine against HPV16/18. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Subhadip Saha, Shubham Vashishtha, Bishwajit Kundu, Monidipa Ghosh |
In-silico design of an immunoinformatics based multi-epitope vaccine against Leishmania donovani. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Bruna Moreira da Silva, Yoochan Myung, David B. Ascher, Douglas E. V. Pires |
epitope3D: a machine learning method for conformational B-cell epitope prediction. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Zeynep Banu Ozger, Pinar Cihan |
A novel ensemble fuzzy classification model in SARS-CoV-2 B-cell epitope identification for development of protein-based vaccine. |
Appl. Soft Comput. |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Thaís Cristina Vilela Rodrigues, Arun Kumar Jaiswal, Marcela Rezende Lemes, Marcos Vinícius da Silva, Helioswilton Sales-Campos, Luiz Carlos Júnior Alcântara, Sthephane Fraga de Oliveira Tosta, Rodrigo Bentes Kato, Khalid J. Alzahrani, Debmalya Barh, Vasco Ariston de Carvalho Azevedo, Sandeep Tiwari, Siomar de Castro Soares |
An immunoinformatics-based designed multi-epitope candidate vaccine (mpme-VAC/STV-1) against Mycoplasma pneumoniae. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Muhammad Suleman, Uzair Asad, Shafia Arshad, Ayaz ur Rahman, Fazal Akbar, Haji Khan, Zahid Hussain, Syed Shujait Ali, Anwar Mohammad, Abbas Khan, Liaqat Ali, Dong-Qing Wei |
Screening of immune epitope in the proteome of the Dabie bandavirus, SFTS, to design a protein-specific and proteome-wide vaccine for immune response instigation using an immunoinformatics approaches. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Yiqi Wang, Haomiao Tang, Chuang Gao, Meixin Ge, Ziteng Li, Zhiqiang Dong, Liang Zhao |
Flexibility-aware graph model for accurate epitope identification. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Fatima Noor, Sajjad Ahmad, Maryam Saleem, Huda Alshaya, Muhammad Qasim, Abdur Rehman, Hamsa Ehsan, Nimra Talib, Hamza Saleem, Yousef A. Bin Jardan, Sidra Aslam |
Designing a multi-epitope vaccine against Chlamydia pneumoniae by integrating the core proteomics, subtractive proteomics and reverse vaccinology-based immunoinformatics approaches. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Anthony F. La Marca, Robson da S. Lopes, Anna Diva P. Lotufo, Daniella C. Bartholomeu, Carlos R. Minussi |
BepFAMN: A Method for Linear B-Cell Epitope Predictions Based on Fuzzy-ARTMAP Artificial Neural Network. |
Sensors |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Marion F. S. Fischer, James E. Crowe Jr., Jens Meiler |
Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Amit Joshi, Nillohit Mitra Ray, Joginder Singh, Atul Kumar Upadhyay, Vikas Kaushik |
T-cell epitope-based vaccine designing against Orthohantavirus: a causative agent of deadly cardio-pulmonary disease. |
Netw. Model. Anal. Health Informatics Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Youjin Kim, Jinhee Park, Junseok Kwon |
B-Cell Linear Epitope Prediction Using Transformer Encoder. |
ICTC |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Yan Liu, Zheng Liu |
Identification of linear epitope with Multiple Sequence Representation Learning Network. |
BIBM |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Rawshon Raha, Yulian Ding, Qiang Liu, Fang-Xiang Wu |
Unseen Epitope-TCR Interaction Prediction based on Amino Acid Physicochemical Properties. |
BIBM |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Avik Bhattacharya, Molly C. Lyons, Samuel J. Landry, Ramgopal R. Mettu |
Incorporating antigen processing into CD4+ T cell epitope prediction with integer linear programming. |
BCB |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Salvador Eugenio C. Caoili |
B-cell epitope prediction for antipeptide paratopes with the HAPTIC2/HEPTAD user toolkit (HUT). |
BCB |
2022 |
DBLP DOI BibTeX RDF |
|
20 | Akash Bahai |
Computational methods for characterizing viral neutralization data and predicting linear B-cell epitopes (Computergestützte Methoden zur Charakterisierung viraler Neutralisierungsdaten und Vorhersage linearer B-Zell-Epitope) (PDF / PS) |
|
2022 |
DOI RDF |
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20 | Toshiaki Noumi, Seiichi Inoue, Haruka Fujita, Kugatsu Sadamitsu, Makoto Sakaguchi, Akiko Tenma, Hironori Nakagami |
Epitope Prediction of Antigen Protein Using Attention-based LSTM Network. |
J. Inf. Process. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Atefeh Ghasemnejad, Samira Bazmara, Mahsa Shadmani, Kamran Pooshang Bagheri |
Designing a New Multi-Epitope Pertussis Vaccine with Highly Population Coverage Based on a Novel Sequence and Structural Filtration Algorithm. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Matin Fathollahi, Anwar Fathollahi, Hamid Motamedi, Jale Moradi, Amirhooshang Alvandi, Ramin Abiri |
In silico vaccine design and epitope mapping of New Delhi metallo-beta-lactamase (NDM): an immunoinformatics approach. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Avisa Maleki, Giulia Russo, Giuseppe Alessandro Parasiliti Palumbo, Francesco Pappalardo 0001 |
In silico design of recombinant multi-epitope vaccine against influenza A virus. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Xiaoyun Yang, Liyuan Zhao, Fang Wei, Jing Li 0107 |
DeepNetBim: deep learning model for predicting HLA-epitope interactions based on network analysis by harnessing binding and immunogenicity information. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Sangeeta Khare, Marli Azevedo, Pravin Parajuli, Kuppan Gokulan |
Conformational Changes of the Receptor Binding Domain of SARS-CoV-2 Spike Protein and Prediction of a B-Cell Antigenic Epitope Using Structural Data. |
Frontiers Artif. Intell. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Alice Triveri, Stefano A. Serapian, Filippo Marchetti, Filippo Doria, Silvia Pavoni, Fabrizio Cinquini, Elisabetta Moroni, Andrea Rasola, Francesco Frigerio, Giorgio Colombo 0001 |
SARS-CoV-2 Spike Protein Mutations and Escape from Antibodies: A Computational Model of Epitope Loss in Variants of Concern. |
J. Chem. Inf. Model. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman |
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Aftab Alam, Arbaaz Khan, Nikhat Imam, Mohd Faizan Siddiqui, Mohd Waseem, Md. Zubbair Malik, Romana Ishrat |
Design of an epitope-based peptide vaccine against the SARS-CoV-2: a vaccine-informatics approach. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Akash Bahai, Ehsaneddin Asgari, Mohammad R. K. Mofrad, Andreas Kloetgen, Alice C. McHardy |
EpitopeVec: linear epitope prediction using deep protein sequence embeddings. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Maria Suprun, Randall J. Ellis, Hugh A. Sampson, Mayte Suárez-Fariñas |
bbeaR: an R package and framework for epitope-specific antibody profiling. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz |
EpiDope: a deep neural network for linear B-cell epitope prediction. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz |
EpiDope: a deep neural network for linear B-cell epitope prediction. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Jodie Ashford, João Reis-Cunha, Igor Lobo, Francisco Pereira Lobo, Felipe Campelo |
Organism-specific training improves performance of linear B-cell epitope prediction. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Bhargab Ghoshal, Biraja Ghoshal, Stephen Swift, Allan Tucker |
Uncertainty Estimation in SARS-CoV-2 B-cell Epitope Prediction for Vaccine Development. |
CoRR |
2021 |
DBLP BibTeX RDF |
|
20 | Alice Del Vecchio, Andreea Deac, Pietro Liò, Petar Velickovic |
Neural message passing for joint paratope-epitope prediction. |
CoRR |
2021 |
DBLP BibTeX RDF |
|
20 | Abdullah Al Saba, Maisha Adiba, Piyal Saha, Md. Ismail Hosen, Sajib Chakraborty, Ahm H. M. Nurun Nabi |
An in-depth in silico and immunoinformatics approach for designing a potential multi-epitope construct for the effective development of vaccine to combat against SARS-CoV-2 encompassing variants of concern and interest. |
Comput. Biol. Medicine |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Abbas Khan, Shahzeb Khan, Shoaib Saleem, N. Nizam-Uddin, Anwar Mohammad, Taimoor Khan, Sajjad Ahmad, Muhammad Arshad 0013, Syed Shujait Ali, Muhammad Suleman, Dong-Qing Wei |
Immunogenomics guided design of immunomodulatory multi-epitope subunit vaccine against the SARS-CoV-2 new variants, and its validation through in silico cloning and immune simulation. |
Comput. Biol. Medicine |
2021 |
DBLP DOI BibTeX RDF |
|
20 | Muhammad Tahir Ul Qamar, Sajjad Ahmad, Israr Fatima, Faisal Ahmad, Farah Shahid, Anam Naz, Sumra Wajid Abbasi, Abbas Khan, Muhammad Usman Mirza, Usman Ali Ashfaq, Ling-Ling Chen |
Designing multi-epitope vaccine against Staphylococcus aureus by employing subtractive proteomics, reverse vaccinology and immuno-informatics approaches. |
Comput. Biol. Medicine |
2021 |
DBLP DOI BibTeX RDF |
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20 | Samira Sanami, Morteza Alizadeh, Masoud Nosrati, Korosh Ashrafi Dehkordi, Fatemeh Azadegan-Dehkordi, Shahram Tahmasebian, Hamed Nosrati, Mohammad-Hassan Arjmand, Maryam Ghasemi-Dehnoo, Ali Rafiei, Nader Bagheri |
Exploring SARS-COV-2 structural proteins to design a multi-epitope vaccine using immunoinformatics approach: An in silico study. |
Comput. Biol. Medicine |
2021 |
DBLP DOI BibTeX RDF |
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20 | Mateusz Sikora, Sören von Bülow, Florian E. C. Blanc, Michael Gecht, Roberto Covino, Gerhard Hummer |
Computational epitope map of SARS-CoV-2 spike protein. |
PLoS Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
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20 | Sarah A. Robinson, Matthew I. J. Raybould, Constantin Schneider, Wing Ki Wong, Claire Marks, Charlotte M. Deane |
Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies. |
PLoS Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
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20 | Matthias Niemann, Nils Lachmann, Kirsten Geneugelijk, Eric Spierings |
Computational Eurotransplant kidney allocation simulations demonstrate the feasibility and benefit of T-cell epitope matching. |
PLoS Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
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20 | Daniel R. Ripoll, Sidhartha Chaudhury, Anders Wallqvist |
Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification. |
PLoS Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
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20 | Fariya Khan, Ajay Kumar |
An integrative docking and simulation-based approach towards the development of epitope-based vaccine against enterotoxigenic Escherichia coli. |
Netw. Model. Anal. Health Informatics Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
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20 | Amirreza Javadi Mamaghani, Zahra Arab-Mazar, Siamak Heidarzadeh, Mohammad Mehdi Ranjbar, Shima Molazadeh, Sama Rashidi, Farzad Niazpour, Mohadeseh Naghi Vishteh, Homayoon Bashiri, Arezoo Bozorgomid, Hamed Behniafar, Mohammad Ashrafi |
In-silico design of a multi-epitope for developing sero-diagnosis detection of SARS-CoV-2 using spike glycoprotein and nucleocapsid antigens. |
Netw. Model. Anal. Health Informatics Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
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20 | Amit Joshi, Dinesh Chandra Pathak, M. Amin-ul Mannan, Vikas Kaushik |
In-silico designing of epitope-based vaccine against the seven banded grouper nervous necrosis virus affecting fish species. |
Netw. Model. Anal. Health Informatics Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
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20 | Aviral Chharia, Apurva Narayan |
A novel fuzzy approach towards in silico B-cell epitope identification inducing antigen-specific immune response for Vaccine Design. |
BIBE |
2021 |
DBLP DOI BibTeX RDF |
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20 | Xiao Yuan, Daniel Bibl, Kahlil Khan, Lei Sun |
Predicting Multi-Epitope Vaccine Candidates Using Natural Language Processing and Deep Learning. |
BIBE |
2021 |
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