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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 14 occurrences of 9 keywords
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Results
Found 78 publication records. Showing 78 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
58 | David B. Knoester, Philip K. McKinley, Charles Ofria |
Cooperative network construction using digital germlines. |
GECCO |
2008 |
DBLP DOI BibTeX RDF |
germline, multilevel selection, mutation, digital evolution, cooperative behavior, natural selection, biologically-inspired computing |
49 | Praveen Kumar Guttula, Pedro T. Monteiro 0001, Mukesh Kumar Gupta |
A Boolean Logical model for Reprogramming of Testes-derived male Germline Stem Cells into Germline pluripotent stem cells. |
Comput. Methods Programs Biomed. |
2020 |
DBLP DOI BibTeX RDF |
|
49 | Praveen Kumar Guttula, Anushka Agarwal, Usharani Maharana, Mukesh Kumar Gupta |
Prediction of novel pluripotent proteins involved in reprogramming of male Germline stem cells (GSCs) into multipotent adult Germline stem cells (maGSCs) by network analysis. |
Comput. Biol. Chem. |
2018 |
DBLP DOI BibTeX RDF |
|
33 | David B. Knoester, Andres J. Ramirez, Philip K. McKinley, Betty H. C. Cheng |
Evolution of robust data distribution among digital organisms. |
GECCO |
2009 |
DBLP DOI BibTeX RDF |
germline, multilevel selection, distributed systems, communication, mutation, digital evolution, cooperative behavior, natural selection, biologically-inspired computing |
25 | Mark Daley |
On the Processing Power of Protozoa. |
CiE |
2008 |
DBLP DOI BibTeX RDF |
|
25 | Xiaojing Wang, Wu Wei, Siyuan Zheng, Zhi-Wei Cao, Yixue Li |
Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin. |
International Conference on Computational Science (2) |
2007 |
DBLP DOI BibTeX RDF |
antibody diversity, V(D)J recombination |
25 | Michael I. Jordan |
Statistical Machine Learning and Computational Biology. |
BIBM |
2007 |
DBLP DOI BibTeX RDF |
|
25 | Jasmin Coulombe-Huntington, Jacek Majewski |
Intron Loss Dynamics in Mammals. |
Comparative Genomics |
2006 |
DBLP DOI BibTeX RDF |
gene structure, mammalian evolution, comparative genomics, introns |
25 | Yury A Barbitoff, Mikhail O. Ushakov, Tatyana E. Lazareva, Yulia A Nasykhova, Andrey S. Glotov, Alexander V. Predeus |
Bioinformatics of germline variant discovery for rare disease diagnostics: current approaches and remaining challenges. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
25 | Kai Wang, Bambarendage P. U. Perera, Rachel K. Morgan, Kimberley Sala-Hamrick, Viviana Geron, Laurie K. Svoboda, Christopher Faulk, Dana C. Dolinoy, Maureen A. Sartor |
piOxi database: a web resource of germline and somatic tissue piRNAs identified by chemical oxidation. |
Database J. Biol. Databases Curation |
2024 |
DBLP DOI BibTeX RDF |
|
25 | William S. DeWitt, Luke Zhu, Mitchell R. Vollger, Michael E. Goldberg, Andrea Talenti, Annabel C. Beichman, Kelley Harris |
mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra. |
J. Open Source Softw. |
2023 |
DBLP DOI BibTeX RDF |
|
25 | Richard Wilton, Alexander S. Szalay |
Short-read aligner performance in germline variant identification. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
25 | Ellie E. Armstrong, Michael G. Campana |
RatesTools: a Nextflow pipeline for detecting de novo germline mutations in pedigree sequence data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
25 | Armando D. Diaz-Gonzalez, Songhui Yue, Sean T. Hayes, Kevin S. Hughes |
Applying BioBERT to Extract Germline Gene-Disease Associations for Building a Knowledge Graph from the Biomedical Literature. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
25 | Armando D. Diaz-Gonzalez, Kevin S. Hughes, Songhui Yue, Sean T. Hayes |
Applying BioBERT to Extract Germline Gene-Disease Associations for Building a Knowledge Graph from the Biomedical Literature. |
ICISDM |
2023 |
DBLP DOI BibTeX RDF |
|
25 | Ani Amar, E. Jane Albert Hubbard, Hillel Kugler |
Modeling the C. elegans germline stem cell genetic network using automated reasoning. |
Biosyst. |
2022 |
DBLP DOI BibTeX RDF |
|
25 | Brendan O'Fallon, Jacob Durtschi, Ana Kellogg, Tracey Lewis, Devin Close, Hunter Best |
Algorithmic improvements for discovery of germline copy number variants in next-generation sequencing data. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
25 | Shuo Shi, Qi Wang, Yunfei Shang, Congfan Bu, Mingming Lu, Meiye Jiang, Hao Zhang, Shuhuan Yu, Jingyao Zeng, Zaichao Zhang, Zhenglin Du, Jing-Fa Xiao |
TSomVar: a tumor-only somatic and germline variant identification method with random forest. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
25 | Sanket Desai, Rohit Mishra, Suhail Ahmad, Supriya Hait, Asim Joshi, Amit Dutt |
TMC-SNPdb 2.0: an ethnic-specific database of Indian germline variants. |
Database J. Biol. Databases Curation |
2022 |
DBLP DOI BibTeX RDF |
|
25 | Yiyuan Fang, Shuyi Deng, Cai Li |
A generalizable deep learning framework for inferring fine-scale germline mutation rate maps. |
Nat. Mac. Intell. |
2022 |
DBLP DOI BibTeX RDF |
|
25 | Sunho Lee, Seokchol Hong, Jonathan Woo, Jae-hak Lee, Kyunghee Kim, Lucia Kim, Kunsoo Park, Jongsun Jung |
RDscan: A New Method for Improving Germline and Somatic Variant Calling Based on Read Depth Distribution. |
J. Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
25 | Janella Baxter |
When is it Safe to Edit the Human Germline? |
Sci. Eng. Ethics |
2021 |
DBLP DOI BibTeX RDF |
|
25 | Praveen Kumar Guttula, Pedro T. Monteiro 0001, Mukesh Kumar Gupta |
Prediction and Boolean logical modelling of synergistic microRNA regulatory networks during reprogramming of male germline pluripotent stem cells. |
Biosyst. |
2021 |
DBLP DOI BibTeX RDF |
|
25 | Shiyang Zeng, Yuwei Hua, Yong Zhang 0006, Guifen Liu, Chengchen Zhao |
GLEANER: a web server for GermLine cycle Expression ANalysis and Epigenetic Roadmap visualization. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
25 | Vandhana Krishnan, Sowmithri Utiramerur, Zena Ng, Somalee Datta, Michael Snyder 0001, Euan A. Ashley |
Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
25 | Maria Zanti, Kyriaki Michailidou, Maria Loizidou, Christina Machattou, Panagiota Pirpa, Kyproula Christodoulou, George M. Spyrou, Kyriacos Kyriacou, Andreas Hadjisavvas |
Performance evaluation of pipelines for mapping, variant calling and interval padding, for the analysis of NGS germline panels. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
25 | Xiaoshun Shi, Ruidong Li, Jianxue Zhai, Allen Menglin Chen, Kailing Huang, Zhouxia Zheng, Zhuona Chen, Xiaoyin Dong, Xiguang Liu, Di Lu, Siyang Feng, Dingwei Diao, Pengfei Ren, Zhaoguo Liu, Grant Morahan, Kaican Cai |
The first comprehensive database of germline pathogenic variants in East Asian cancer patients. |
Database J. Biol. Databases Curation |
2021 |
DBLP DOI BibTeX RDF |
|
25 | José Marcos Moreno-Cabrera, Jesús del Valle, Elisabeth Castellanos, Lidia Feliubadaló, Marta Pineda, Eduard Serra, Gabriel Capellá, Conxi Lázaro, Bernat Gel |
CNVfilteR: an R/Bioconductor package to identify false positives produced by germline NGS CNV detection tools. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
25 | Praveen Kumar Guttula, Mukesh Kumar Gupta |
Dynamic basis of mRNA processing in male germline stem cell pluripotency and reprogramming by alternative polyadenylation. |
Int. J. Data Min. Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
25 | Noor Munirah Isa, Nurul Atiqah Zulkifli, Saadan Man |
Islamic Perspectives on CRISPR/Cas9-Mediated Human Germline Gene Editing: A Preliminary Discussion. |
Sci. Eng. Ethics |
2020 |
DBLP DOI BibTeX RDF |
|
25 | Xue Jiang, Mohammad Asad, Lin Li, Zhanpeng Sun, Jean-Sébastien Milanese, Bo Liao, Edwin Wang |
Germline genomes have a dominant-heritable contribution to cancer immune evasion and immunotherapy response. |
Quant. Biol. |
2020 |
DBLP DOI BibTeX RDF |
|
25 | Maxime Garcia, Szilveszter Juhos, Malin Larsson, Páll Ísólfur Ólason, Marcel Martin, Jesper Eisfeldt, Sebastian DiLorenzo, Johanna Sandgren, Teresita Diaz de Ståhl, Philip Ewels, Valtteri Wirta, Monica Nistér, Max Käller, Björn Nystedt |
Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants. |
F1000Research |
2020 |
DBLP DOI BibTeX RDF |
|
25 | William Meyerson, John Leisman, Fabio C. P. Navarro, Mark Gerstein |
Origins and characterization of variants shared between databases of somatic and germline human mutations. |
BMC Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
25 | Jing-Bo Zhou, Yao Xiong, Ke An, Zhi-Qiang Ye, Yun-Dong Wu |
IDRMutPred: predicting disease-associated germline nonsynonymous single nucleotide variants (nsSNVs) in intrinsically disordered regions. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
25 | Ruibang Luo, Chak-Lim Wong, Yat-Sing Wong, Chi Ian Tang, Chi-Man Liu, Chi-Ming Leung, Tak Wah Lam |
Exploring the limit of using a deep neural network on pileup data for germline variant calling. |
Nat. Mach. Intell. |
2020 |
DBLP DOI BibTeX RDF |
|
25 | Jie Liu, Xiaotian Wu, Kai Zhang, Bing Liu, Renyi Bao, Xiao Chen, Yiran Cai, Yiming Shen, Xinjun He, Jun Yan, Weixing Ji |
Computational Performance of a Germline Variant Calling Pipeline for Next Generation Sequencing. |
CoRR |
2020 |
DBLP BibTeX RDF |
|
25 | Rachel L. Mintz, John D. Loike, Ruth L. Fischbach |
Will CRISPR Germline Engineering Close the Door to an Open Future? |
Sci. Eng. Ethics |
2019 |
DBLP DOI BibTeX RDF |
|
25 | Meng Zou, Rui Jin, Kin Fai Au |
Revealing tumor heterogeneity of breast cancer by utilizing the linkage between somatic and germline mutations. |
Briefings Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
25 | Nicholas Kinney, Kyle Titus-Glover, Jonathan D. Wren, Robin T. Varghese, Pawel Michalak, Han Liao, Ramu Anandakrishnan, Arichanah Pulenthiran, Lin Kang, Harold R. Garner |
CAGm: a repository of germline microsatellite variations in the 1000 genomes project. |
Nucleic Acids Res. |
2019 |
DBLP DOI BibTeX RDF |
|
25 | Tamsen Dunn, Gwenn Berry, Dorothea Emig-Agius, Yu Jiang, Serena Lei, Anita Iyer, Nitin Udar, Han-Yu Chuang, Jeff Hegarty, Michael Dickover, Brandy Klotzle, Justin Robbins, Marina Bibikova, Marc Peeters, Michael Strömberg |
Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
25 | Adam D. Scott, Kuan-Lin Huang, Amila Weerasinghe, R. Jay Mashl, Qingsong Gao, Fernanda Martins Rodrigues, Matthew A. Wyczalkowski, Li Ding |
CharGer: clinical Characterization of Germline variants. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
25 | Yongzhuang Liu, Jian Liu, Yadong Wang |
Joint detection of germline and somatic copy number events in matched tumor-normal sample pairs. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
25 | Duncan K. Ralph, Frederick A. Matsen IV |
Per-sample immunoglobulin germline inference from B cell receptor deep sequencing data. |
PLoS Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
25 | Stephan Guttinger |
Trust in Science: CRISPR-Cas9 and the Ban on Human Germline Editing. |
Sci. Eng. Ethics |
2018 |
DBLP DOI BibTeX RDF |
|
25 | Dorota H. Sendorek, Cristian Caloian, Kyle Ellrott, J. Christopher Bare, Takafumi N. Yamaguchi, Adam D. Ewing, Kathleen E. Houlahan, Thea C. Norman, Adam A. Margolin, Joshua M. Stuart, Paul C. Boutros |
Germline contamination and leakage in whole genome somatic single nucleotide variant detection. |
BMC Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
25 | Zhihui Luo 0003, Xinping Fan, Yao Su 0005, Yu S. Huang |
Accurity: accurate tumor purity and ploidy inference from tumor-normal WGS data by jointly modelling somatic copy number alterations and heterozygous germline single-nucleotide-variants. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
25 | James X. Sun, Yuting He, Eric Sanford, Meagan Montesion, Garrett M. Frampton, Stéphane Vignot, Jean-Charles Soria, Jeffrey S. Ross, Vincent A. Miller, Philip J. Stephens, Doron Lipson, Roman Yelensky |
A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal. |
PLoS Comput. Biol. |
2018 |
DBLP DOI BibTeX RDF |
|
25 | Siwei Chen, Juan F. Beltrán, Clara Esteban-Jurado, Sebastià Franch-Expósito, Sergi Castellví-Bel, Steven Lipkin, Xiaomu Wei, Haiyuan Yu |
GeMSTONE: orchestrated prioritization of human germline mutations in the cloud. |
Nucleic Acids Res. |
2017 |
DBLP DOI BibTeX RDF |
|
25 | Yu Geng 0001, Zhongmeng Zhao, Jing Xu, Ruoyu Liu, Yi Huang, Xuanping Zhang, Xiao Xiao, Maomao, Jiayin Wang |
Identifying Heterogeneity Patterns of Allelic Imbalance on Germline Variants to Infer Clonal Architecture. |
ICIC (2) |
2017 |
DBLP DOI BibTeX RDF |
|
25 | Yu Geng 0001, Zhongmeng Zhao, Daibin Cui, Tian Zheng, Xuanping Zhang, Xiao Xiao, Jiayin Wang |
An Expanded Association Approach for Rare Germline Variants with Copy-Number Alternation. |
IWBBIO (2) |
2017 |
DBLP DOI BibTeX RDF |
|
25 | Tamsen Dunn, Gwenn Berry, Dorothea Emig-Agius, Yu Jiang, Anita Iyer, Nitin Udar, Michael Strömberg |
Pisces: An Accurate and Versatile Single Sample Somatic and Germline Variant Caller. |
BCB |
2017 |
DBLP DOI BibTeX RDF |
|
25 | Gregory W. Schwartz, Ali Shokoufandeh, Santiago Ontañón, Uri Hershberg |
Using a novel clumpiness measure to unite data with metadata: Finding common sequence patterns in immune receptor germline V genes. |
Pattern Recognit. Lett. |
2016 |
DBLP DOI BibTeX RDF |
|
25 | Daniel Chubb, Peter Broderick, Sara E. Dobbins, Richard S. Houlston |
CanVar: A resource for sharing germline variation in cancer patients. |
F1000Research |
2016 |
DBLP DOI BibTeX RDF |
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25 | Pawan Upadhyay, Nilesh Gardi, Sanket Desai, Bikram Sahoo, Ankita Singh, Trupti Togar, Prajish Iyer, Ratnam Prasad, Pratik Chandrani, Sudeep Gupta, Amit Dutt |
TMC-SNPdb: an Indian germline variant database derived from whole exome sequences. |
Database J. Biol. Databases Curation |
2016 |
DBLP DOI BibTeX RDF |
|
25 | Xiaoyu Chen, Ole Schulz-Trieglaff, Richard Shaw, Bret Barnes, Felix Schlesinger, Morten Källberg, Anthony J. Cox, Semyon Kruglyak, Christopher T. Saunders |
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. |
Bioinform. |
2016 |
DBLP DOI BibTeX RDF |
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25 | Rachel Karchin, Ruth Nussinov |
Genome Landscapes of Disease: Strategies to Predict the Phenotypic Consequences of Human Germline and Somatic Variation. |
PLoS Comput. Biol. |
2016 |
DBLP DOI BibTeX RDF |
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25 | Yongchao Liu, Martin Loewer, Srinivas Aluru, Bertil Schmidt |
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations. |
BMC Syst. Biol. |
2016 |
DBLP DOI BibTeX RDF |
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25 | Amanda Koire, Panagiotis Katsonis, Olivier Lichtarge |
Repurposing Germline Exomes of the Cancer Genome Atlas Demands a Cautious Approach and Sample-Specific Variant Filtering. |
PSB |
2016 |
DBLP BibTeX RDF |
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25 | Jia Li 0007, Marie-Anne Poursat, Damien Drubay, Arnaud Motz, Zohra Saci, Antonin Morillon, Stefan Michiels, Daniel Gautheret |
A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic Events. |
PLoS Comput. Biol. |
2015 |
DBLP DOI BibTeX RDF |
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25 | Yongchao Liu, Martin Loewer, Srinivas Aluru, Bertil Schmidt |
SNVSniffer: An integrated caller for germline and somatic SNVs based on Bayesian models. |
BIBM |
2015 |
DBLP DOI BibTeX RDF |
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25 | Jasmita Gill, Praapti Jayaswal, Dinakar M. Salunke |
Antigen exposure leads to rigidification of germline antibody combining site. |
J. Bioinform. Comput. Biol. |
2014 |
DBLP DOI BibTeX RDF |
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25 | Michael Pargett, Ann E. Rundell, Gregery T. Buzzard, David M. Umulis |
Model-Based Analysis for Qualitative Data: An Application in Drosophila Germline Stem Cell Regulation. |
PLoS Comput. Biol. |
2014 |
DBLP DOI BibTeX RDF |
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25 | Hao Hu, Chad D. Huff |
Detecting Statistical Interaction Between Somatic Mutational Events and Germline Variation from Next-Generation Sequence Data. |
Pacific Symposium on Biocomputing |
2014 |
DBLP BibTeX RDF |
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25 | Eric Bareke, Virginie Saillour, Jean-François Spinella, Ramon Vidal, Jasmine Healy, Daniel Sinnett, Miklós Csürös |
Joint genotype inference with germline and somatic mutations. |
BMC Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
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25 | Bernard J. Pope, Tu Nguyen-Dumont, Fabrice Odefrey, Russell Bell, Sean V. Tavtigian, David E. Goldgar, Andrew Lonie, Melissa C. Southey, Daniel J. Park |
FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets. |
BMC Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
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25 | Jordan R. Willis, Bryan S. Briney, Samuel L. DeLuca, James E. Crowe Jr., Jens Meiler |
Human Germline Antibody Gene Segments Encode Polyspecific Antibodies. |
PLoS Comput. Biol. |
2013 |
DBLP DOI BibTeX RDF |
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25 | José M. G. Izarzugaza, Lisa E. M. Hopcroft, Anja Baresic, Christine A. Orengo, Andrew C. R. Martin, Alfonso Valencia |
Characterization of pathogenic germline mutations in human Protein Kinases. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
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25 | Ninad Dewal |
Integration of Germline and Somatic Variation in Tumor Data. |
|
2011 |
DOI RDF |
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25 | Aurélie Lardenois, Alexandre Gattiker, Olivier Collin, Frédéric Chalmel, Michael Primig |
GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle. |
Database J. Biol. Databases Curation |
2010 |
DBLP DOI BibTeX RDF |
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25 | Isabelle Callebaut, Jean Paul Mornon |
LOTUS, a new domain associated with small RNA pathways in the germline. |
Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
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25 | Leif E. Peterson, Jaya Paranilam, Jiaqiong Xu, Federico A. Monzon |
Genome-wide germline single nucleotide polymorphisms for cancer classification in the Framingham Heart Study. |
IJCNN |
2010 |
DBLP DOI BibTeX RDF |
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25 | Xiaojing Wang, Di Wu, Siyuan Zheng, Jing Sun, Lin Tao, Yixue Li, Zhi-Wei Cao |
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. |
BMC Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
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25 | Bruno A. Gaëta, Harald R. Malming, Katherine J. L. Jackson, Michael E. Bain, Patrick Wilson, Andrew M. Collins |
iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences. |
Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
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25 | Hidenori Inaoka, Yutaka Fukuoka, Isaac S. Kohane |
Lower expression of genes near microRNA in C. elegans germline. |
BMC Bioinform. |
2006 |
DBLP DOI BibTeX RDF |
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25 | Felix Thiele |
A moral argument against human germline therapy? |
Poiesis Prax. |
2002 |
DBLP DOI BibTeX RDF |
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25 | Z. Sedlacek, R. Kodet, Annemarie Poustka, P. Goetz |
A database of germline p53 mutations in cancer-prone families. |
Nucleic Acids Res. |
1998 |
DBLP DOI BibTeX RDF |
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25 | Pierre Laurent-Puig, Christophe Béroud, Thierry Soussi |
APC gene: database of germline and somatic mutations in human tumors and cell lines. |
Nucleic Acids Res. |
1998 |
DBLP DOI BibTeX RDF |
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25 | Christophe Béroud, Thierry Soussi |
APC gene: database of germline and somatic mutations in human tumors and cell lines. |
Nucleic Acids Res. |
1996 |
DBLP DOI BibTeX RDF |
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