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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 6 occurrences of 6 keywords
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Results
Found 67 publication records. Showing 67 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 153 | Anil Sorathiya, Pietro Liò, Luca Sguanci |
Mathematical Model of HIV Superinfection and Comparative Drug Therapy.  |
ICARIS  |
2009 |
DBLP DOI BibTeX RDF |
viral dynamics, quasispecies, coinfection, superinfection, HAART, Maraviroc, Zinc-finger nucleases, HIV |
| 121 | Kelly Westbrooks, Irina Astrovskaya, David S. Campo, Yuri Khudyakov, Piotr Berman, Alexander Zelikovsky |
HCV Quasispecies Assembly Using Network Flows. |
ISBRA |
2008 |
DBLP DOI BibTeX RDF |
|
| 97 | Sheng-Lung Peng, Yu-Wei Tsay |
Verification of Pathotyping by Quasispecies Model. |
ICIC (1) |
2009 |
DBLP DOI BibTeX RDF |
|
| 49 | Vladimir G. Red'ko, Yuri Tsoy |
Estimation of the Evolution Speed for the Quasispecies Model: Arbitrary Alphabet Case. |
ICAISC |
2006 |
DBLP DOI BibTeX RDF |
|
| 48 | Julie Bernal, Trevor I. Dix, Lloyd Allison, Angeline Bartholomeusz, Lilly Yuen |
Modelling Hepatitis B Virus Antiviral Therapy and Drug Resistant Mutant Strains. |
ACAL |
2009 |
DBLP DOI BibTeX RDF |
|
| 48 | Gabriela Ochoa, Klaus Jaffe |
Assortative Mating Drastically Alters the Magnitude of Error Thresholds. |
PPSN |
2006 |
DBLP DOI BibTeX RDF |
|
| 33 | Yoshiteru Ishida |
Symmetries on Asymmetric Wars: Generalists (HIVs) Versus Specialists (T-cells). |
KES (3) |
2007 |
DBLP DOI BibTeX RDF |
additive symmetry, asymmetric war, quasispecies, diversity |
| 25 | David S. Stevenson |
Modelling the structure and evolution of cultural information as quasispecies. |
Biosyst. |
2024 |
DBLP DOI BibTeX RDF |
|
| 25 | Borja Freire, Susana Ladra, José R. Paramá, Leena Salmela |
ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based Flow Networks. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 25 | Xiaoli Jiao, Hiromi Imamichi, Brad T. Sherman, Rishub Nahar, Robin L. Dewar, H. Clifford Lane, Tomozumi Imamichi, Weizhong Chang |
QuasiSeq: profiling viral quasispecies via self-tuning spectral clustering with PacBio long sequencing reads. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 25 | Hansheng Xue, Vaibhav Rajan, Yu Lin 0001 |
Graph Coloring via Neural Networks for Haplotype Assembly and Viral Quasispecies Reconstruction. |
CoRR |
2022 |
DBLP DOI BibTeX RDF |
|
| 25 | Hansheng Xue, Vaibhav Rajan, Yu Lin 0001 |
Graph Coloring via Neural Networks for Haplotype Assembly and Viral Quasispecies Reconstruction. |
NeurIPS |
2022 |
DBLP BibTeX RDF |
|
| 25 | Ziqi Ke, Haris Vikalo |
Deep learning for assembly of haplotypes and viral quasispecies from short and long sequencing reads. |
BCB |
2022 |
DBLP DOI BibTeX RDF |
|
| 25 | Sergey Knyazev, Lauren Hughes, Pavel Skums, Alexander Zelikovsky |
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 25 | Borja Freire, Susana Ladra, José R. Paramá, Leena Salmela |
Inference of viral quasispecies with a paired de Bruijn graph. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
| 25 | Borja Freire, Susana Ladra, José R. Paramá, Leena Salmela |
ViQUF: de novo Viral Quasispecies reconstruction using Unitig-based Flow networks. |
CoRR |
2021 |
DBLP BibTeX RDF |
|
| 25 | A. V. Sedelnikov, E. S. Khnyryova |
Estimate of parameters changing of the Lymantria dispar artificial population in different environmental conditions using the quasispecies model. |
Int. J. Model. Simul. Sci. Comput. |
2020 |
DBLP DOI BibTeX RDF |
|
| 25 | Marco Cacciabue, Anabella Currá, Elisa Carrillo, Guido König, María Inés Gismondi |
A beginner's guide for FMDV quasispecies analysis: sub-consensus variant detection and haplotype reconstruction using next-generation sequencing. |
Briefings Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 25 | Ziqi Ke, Haris Vikalo |
A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction. |
AAAI |
2020 |
DBLP DOI BibTeX RDF |
|
| 25 | Ziqi Ke, Haris Vikalo |
A Convolutional Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction. |
NeurIPS |
2020 |
DBLP BibTeX RDF |
|
| 25 | Jasmijn A. Baaijens, Bastiaan Van der Roest, Johannes Köster, Leen Stougie, Alexander Schönhuth |
Full-length de novo viral quasispecies assembly through variation graph construction. |
Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 25 | Ziqi Ke, Haris Vikalo |
A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction. |
CoRR |
2019 |
DBLP BibTeX RDF |
|
| 25 | Dan Huang, Jingli Wu |
基于彩色编码技术的准种重建算法 (Quasispecies Reconstruction Algorithm Based on Color Coding Technology). |
计算机科学 |
2019 |
DBLP DOI BibTeX RDF |
|
| 25 | Soyeon Ahn, Ziqi Ke, Haris Vikalo |
Viral quasispecies reconstruction via tensor factorization with successive read removal. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 25 | Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor 0002, Guo-liang Xia, Yury Khudyakov |
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 25 | Jiao Chen, Yingchao Zhao 0001, Yanni Sun |
De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 25 | Soyeon Ahn, Ziqi Ke, Haris Vikalo |
Viral quasispecies reconstruction via tensor factorization. |
Allerton |
2017 |
DBLP DOI BibTeX RDF |
|
| 25 | Alexander Artyomenko, Pelin B. Icer, Pavel Skums, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky |
Agent-Based in Silico Evolution of HCV Quasispecies. |
ISBRA |
2017 |
DBLP DOI BibTeX RDF |
|
| 25 | Xiaoli Jiao, Hiromi Imamichi, Tauseef Rehman, Rishub Nahar, Robin L. Dewar, H. Clifford Lane, Tomozumi Imamichi, Brad T. Sherman |
Self-Tuning Spectral Clustering for Full-length Viral Quasispecies Reconstruction with PacBio Long Reads. |
BCB |
2017 |
DBLP DOI BibTeX RDF |
|
| 25 | Joseba Dalmau |
Distribution of the quasispecies for a Galton-Watson process on the sharp peak landscape. |
J. Appl. Probab. |
2016 |
DBLP DOI BibTeX RDF |
|
| 25 | Duleepa Jayasundara, Isaam Saeed, Bc Chang, Sen-Lin Tang, Saman K. Halgamuge |
Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness. |
BMC Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
| 25 | Duleepa Jayasundara, Isaam Saeed, Suhinthan Maheswararajah, Bill C. Chang, Sen-Lin Tang, Saman K. Halgamuge |
ViQuaS: an improved reconstruction pipeline for viral quasispecies spectra generated by next-generation sequencing. |
Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
| 25 | Raphaël Cerf |
The quasispecies regime for the simple genetic algorithm with roulette-wheel selection. |
CoRR |
2015 |
DBLP BibTeX RDF |
|
| 25 | Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky |
2SNV: Quasispecies reconstruction from PacBio reads. |
ICCABS |
2015 |
DBLP DOI BibTeX RDF |
|
| 25 | Josep Gregori, Miquel Salicru, Esteban Domingo, Alex Sánchez-Pla, Juan I. Esteban, Francisco Rodríguez-Frías, Josep Quer |
Inference with viral quasispecies diversity indices: clonal and NGS approaches. |
Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 25 | Raphaël Cerf |
The quasispecies regime for the simple genetic algorithm with ranking selection. |
CoRR |
2014 |
DBLP BibTeX RDF |
|
| 25 | Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel |
Viral Quasispecies Assembly via Maximal Clique Enumeration. |
PLoS Comput. Biol. |
2014 |
DBLP DOI BibTeX RDF |
|
| 25 | Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel |
Viral Quasispecies Assembly via Maximal Clique Enumeration. |
RECOMB |
2014 |
DBLP DOI BibTeX RDF |
|
| 25 | Diyue Bu, Haixu Tang |
Quasispecies reconstruction based on vertex coloring algorithms. |
BIBM |
2014 |
DBLP DOI BibTeX RDF |
|
| 25 | Serghei Mangul, Nicholas C. Wu, Nicholas Mancuso, Alex Zelikovsky, Ren Sun, Eleazar Eskin |
VGA: A method for viral quasispecies assembly from ultra-deep sequencing data. |
ICCABS |
2014 |
DBLP DOI BibTeX RDF |
|
| 25 | Armin Töpfer, Niko Beerenwinkel |
Viral quasispecies assembly from paired-end reads. |
ICCABS |
2014 |
DBLP DOI BibTeX RDF |
|
| 25 | Bastian Beggel |
Determining and utilizing the quasispecies of the hepatitis B virus in clinical applications. |
|
2014 |
RDF |
|
| 25 | Wan-Ting Poh, Eryu Xia, Kwanrutai Chin-inmanu, Lai-Ping Wong, Anthony Youzhi Cheng, Prida Malasit, Prapat Suriyaphol, Yik-Ying Teo, Rick Twee-Hee Ong |
Viral quasispecies inference from 454 pyrosequencing. |
BMC Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
|
| 25 | Armin Töpfer, Osvaldo Zagordi, Sandhya Prabhakaran, Volker Roth 0001, Eran Halperin, Niko Beerenwinkel |
Probabilistic Inference of Viral Quasispecies Subject to Recombination. |
J. Comput. Biol. |
2013 |
DBLP DOI BibTeX RDF |
|
| 25 | Alexander Artyomenko, Nicholas Mancuso, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu |
kGEM: An EM-based algorithm for local reconstruction of viral quasispecies. |
ICCABS |
2013 |
DBLP DOI BibTeX RDF |
|
| 25 | Pavel Skums, David S. Campo, Zoya Dimitrova, Leonid Bunimovich, Yuri Khudyakov |
Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies. |
ICCABS |
2013 |
DBLP DOI BibTeX RDF |
|
| 25 | Mattia C. F. Prosperi, Marco Salemi |
QuRe: software for viral quasispecies reconstruction from next-generation sequencing data. |
Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
|
| 25 | Austin Huang, Rami Kantor, Allison DeLong, Leeann Schreier, Sorin Istrail |
QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads. |
Silico Biol. |
2012 |
DBLP DOI BibTeX RDF |
|
| 25 | Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alex Zelikovsky |
Reconstructing viral quasispecies from NGS amplicon reads. |
Silico Biol. |
2012 |
DBLP DOI BibTeX RDF |
|
| 25 | Osvaldo Zagordi, Armin Töpfer, Sandhya Prabhakaran, Volker Roth 0001, Eran Halperin, Niko Beerenwinkel |
Probabilistic Inference of Viral Quasispecies Subject to Recombination. |
RECOMB |
2012 |
DBLP DOI BibTeX RDF |
|
| 25 | Rachel J. O'Neill, Ion I. Mandoiu, Mazhar I. Khan, Craig Obergfell, Hongjun Wang, Andrew Bligh, Bassam Tork, Nicholas Mancuso, Alexander Zelikovsky |
Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data. |
ICCABS |
2012 |
DBLP DOI BibTeX RDF |
|
| 25 | Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alexander Zelikovsky |
Workshop: A maximum likelihood method for quasispecies spectrum assembly. |
ICCABS |
2012 |
DBLP DOI BibTeX RDF |
|
| 25 | Irina Astrovskaya, Bassam Tork, Serghei Mangul, Kelly Westbrooks, Ion I. Mandoiu, Peter Balfe, Alex Zelikovsky |
Inferring viral quasispecies spectra from 454 pyrosequencing reads. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 25 | Mattia C. F. Prosperi, Luciano Prosperi, Alessandro Bruselles, Isabella Abbate, Gabriella Rozera, Donatella Vincenti, Maria Carmela Solmone, Maria Rosaria Capobianchi, Giovanni Ulivi |
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 25 | Austin Huang, Rami Kantor, Allison DeLong, Leeann Schreier, Sorin Istrail |
QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads. |
BIBM Workshops |
2011 |
DBLP DOI BibTeX RDF |
|
| 25 | Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov |
Modelling differential interferon resistance of HCV quasispecies. |
BIBM Workshops |
2011 |
DBLP DOI BibTeX RDF |
|
| 25 | Nicholas Mancuso, Bassam Tork, Pavel Skums, Ion I. Mandoiu, Alexander Zelikovsky |
Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads. |
BIBM Workshops |
2011 |
DBLP DOI BibTeX RDF |
|
| 25 | Paola Falugi, Laura Giarré |
Identification and validation of quasispecies models for biological systems. |
Syst. Control. Lett. |
2009 |
DBLP DOI BibTeX RDF |
|
| 25 | Emmanuel Tannenbaum, José Fernando Fontanari |
A quasispecies approach to the evolution of sexual replication in unicellular organisms. |
Theory Biosci. |
2008 |
DBLP DOI BibTeX RDF |
|
| 25 | Masayuki Fujisawa, Yoshiteru Ishida |
A probabilistic simulator for population dynamics of quasispecies. |
Artif. Life Robotics |
2008 |
DBLP DOI BibTeX RDF |
|
| 25 | Ha Youn Lee, Alan S. Perelson, Su-Chan Park, Thomas Leitner |
Dynamic Correlation between Intrahost HIV-1 Quasispecies Evolution and Disease Progression. |
PLoS Comput. Biol. |
2008 |
DBLP DOI BibTeX RDF |
|
| 25 | Antonio Miguel Mora, Juan Julián Merelo Guervós, Carlos Briones, Federico Morán, Juan Luis Jiménez Laredo |
Clustering and Visualizing HIV Quasispecies Using Kohonen's Self-Organizing Maps. |
IWANN |
2007 |
DBLP DOI BibTeX RDF |
|
| 25 | James J. Bull, Lauren Ancel Meyers, Michael Lachmann |
Quasispecies Made Simple. |
PLoS Comput. Biol. |
2005 |
DBLP DOI BibTeX RDF |
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| 25 | Patricia Buendia, Giri Narasimhan |
MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies. |
CSB |
2004 |
DBLP DOI BibTeX RDF |
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| 25 | Jeffrey J. Stewart, Perry Watts, Samuel Litwin |
An algorithm for mapping positively selected members of quasispecies-type viruses. |
BMC Bioinform. |
2001 |
DBLP DOI BibTeX RDF |
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| 25 | Prasith Baccam, Robert J. Thompson, Olivier Fedrigo, Susan Carpenter, James L. Cornette |
PAQ: Partition Analysis of Quasispecies. |
Bioinform. |
2001 |
DBLP DOI BibTeX RDF |
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| 24 | Yoshiteru Ishida |
A Note on Symmetries on Equations of Population Dynamics and Stability Conditions. |
KES (3) |
2007 |
DBLP DOI BibTeX RDF |
additive symmetry, stability, identity, diagram, degeneracy |
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